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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11985 and 11986 are separated by 676 nucleotides
11986 and 11987 are separated by 288 nucleotides
11987 and 11988 are separated by 306 nucleotides
11988 and 11989 are separated by 183 nucleotides
mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175,125 to 177,580
11985
mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178,257 to 178,945
11986
mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455
11987
mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020
11988
mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483
11989
Group
Condition
mRNA
_3617
mRNA
_3618
mRNA
_3619
mRNA
_3620
mRNA
_3621
11985
11986
11987
11988
11989
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-0.9
-0.3
+0.2
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.2
+0.2
-0.4
auxotrophy
YNB Glucose
+0.5
+0.1
-0.5
-0.1
-0.3
auxotrophy
Dropout Complete
+0.3
+0.1
-0.5
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.0
-0.2
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
+0.3
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.1
-0.8
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
+0.3
+0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.0
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.5
-0.1
+0.0
-0.1
growth on ypd
YPD
-0.3
+0.5
-0.0
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.5
-0.4
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
+0.2
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.2
-0.4
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
+0.4
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.0
+0.5
+0.7
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.5
+0.1
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
-0.3
+0.3
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.4
+1.1
+0.3
-0.2
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