Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11985 and 11986 are separated by 676 nucleotides11986 and 11987 are separated by 288 nucleotides11987 and 11988 are separated by 306 nucleotides11988 and 11989 are separated by 183 nucleotides mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175,125 to 177,580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178,257 to 178,945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989
Group Condition mRNA_3617 mRNA_3618 mRNA_3619 mRNA_3620 mRNA_3621
11985 11986 11987 11988 11989
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.1 -0.9 -0.3 +0.2
growth on oleic acid YNB Glucose -0.1 -0.1 -0.2 +0.2 -0.4
auxotrophy YNB Glucose +0.5 +0.1 -0.5 -0.1 -0.3
auxotrophy Dropout Complete +0.3 +0.1 -0.5 -0.0 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.5 -0.0 -0.2 -0.3 -0.0
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.2 +0.3 -0.0 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.6 +0.1 -0.8 +0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.3 +0.3 +0.1 -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.1 -0.0 -0.3 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.5 -0.1 +0.0 -0.1
growth on ypd YPD -0.3 +0.5 -0.0 -0.2 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.5 -0.4 +0.3 +0.0
growth on oleic acid YNB Oleic Acid +0.4 -0.3 +0.2 +0.2 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.8 +0.2 -0.4 +0.1 -0.2
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.1 -0.1 +0.3 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.0 +0.3 -0.0 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 +0.4 +0.4 +0.2 -0.3
growth on ricinoleic acid YNB Glucose -0.0 +0.5 +0.7 -0.1 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 +0.5 +0.1 +0.1 +0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.6 -0.3 +0.3 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.7 -0.4 +1.1 +0.3 -0.2
remove
mRNA_3617
plot
remove
mRNA_3618
plot
remove
mRNA_3619
remove
mRNA_3620
plot
remove
mRNA_3621
plot