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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11986 and 11987 are separated by 288 nucleotides
11987 and 11988 are separated by 306 nucleotides
11988 and 11989 are separated by 183 nucleotides
11989 and 11990 are separated by 534 nucleotides
mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178,257 to 178,945
11986
mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455
11987
mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020
11988
mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483
11989
mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381
11990
Group
Condition
mRNA
_3618
mRNA
_3619
mRNA
_3620
mRNA
_3621
mRNA
_3622
11986
11987
11988
11989
11990
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.9
-0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.3
+0.1
-0.5
-1.4
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
+0.2
-0.2
-1.1
growth on oleic acid
YNB Glucose
-0.1
-0.2
+0.2
-0.4
-0.3
auxotrophy
YNB Glucose
+0.1
-0.5
-0.1
-0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
-0.3
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.8
+0.2
-0.1
+0.0
auxotrophy
Dropout Complete
+0.1
-0.5
-0.0
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
+0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
+0.2
-0.3
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.3
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.3
+0.5
+0.1
growth on ypd
YPD
+0.5
-0.0
-0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.1
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
-0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.4
+0.3
+0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.5
+0.7
-0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.3
+0.3
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+1.1
+0.3
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
+0.1
+0.5
+0.3
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