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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11987 and 11988 are separated by 306 nucleotides
11988 and 11989 are separated by 183 nucleotides
11989 and 11990 are separated by 534 nucleotides
11990 and 11991 are separated by 1876 nucleotides
mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455
11987
mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020
11988
mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483
11989
mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381
11990
mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689
11991
Group
Condition
mRNA
_3619
mRNA
_3620
mRNA
_3621
mRNA
_3622
mRNA
_3623
11987
11988
11989
11990
11991
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.5
-1.4
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.2
-1.1
-0.5
auxotrophy
YNB Glucose
-0.5
-0.1
-0.3
+0.0
-0.3
auxotrophy
Dropout Complete
-0.5
-0.0
-0.1
+0.0
-0.4
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.4
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.8
+0.2
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.2
-0.3
-0.9
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
-0.2
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.3
-0.0
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.3
+0.2
-0.1
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
-0.1
+0.2
+0.1
growth on ypd
YPD
-0.0
-0.2
+0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.7
-0.1
-0.4
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.3
+0.5
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.2
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
+0.0
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.5
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.3
+0.2
-0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
+0.2
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+1.1
+0.3
-0.2
+0.3
+1.0
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