Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11987 and 11988 are separated by 306 nucleotides11988 and 11989 are separated by 183 nucleotides11989 and 11990 are separated by 534 nucleotides11990 and 11991 are separated by 1876 nucleotides mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990 mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991
Group Condition mRNA_3619 mRNA_3620 mRNA_3621 mRNA_3622 mRNA_3623
11987 11988 11989 11990 11991
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.1 -0.5 -1.4 -0.3
growth on oleic acid YNB Oleic Acid +0.2 +0.2 -0.2 -1.1 -0.5
auxotrophy YNB Glucose -0.5 -0.1 -0.3 +0.0 -0.3
auxotrophy Dropout Complete -0.5 -0.0 -0.1 +0.0 -0.4
growth on oleic acid YNB Glucose -0.2 +0.2 -0.4 -0.3 -0.2
auxotrophy YNB Glucose 75mM Methionine -0.8 +0.2 -0.1 +0.0 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 +0.2 -0.3 -0.9 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.4 +0.1 -0.2 -0.0 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.3 -0.0 -0.1 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.9 -0.3 +0.2 -0.1 +0.8
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.0 -0.1 +0.2 +0.1
growth on ypd YPD -0.0 -0.2 +0.3 -0.1 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.3 +0.3 +0.1 -0.1
growth on ricinoleic acid YNB Glucose +0.7 -0.1 -0.4 +0.1 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -0.3 +0.5 +0.1 +0.3
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.0 -0.2 +0.1 +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.4 +0.3 +0.0 +0.2 +0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.1 +0.5 +0.3 -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.3 +0.2 -0.0 +0.5
ypd buoyancy 40 hrs Median Buoyancy +0.3 -0.0 +0.2 +0.1 +0.4
ypd buoyancy 40 hrs No Buoyancy Separation +1.1 +0.3 -0.2 +0.3 +1.0
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