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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11989 and 11990 are separated by 534 nucleotides
11990 and 11991 are separated by 1876 nucleotides
11991 and 11992 are separated by 689 nucleotides
11992 and 11993 are separated by 251 nucleotides
mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483
11989
mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381
11990
mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689
11991
mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590
11992
mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624
11993
Group
Condition
mRNA
_3621
mRNA
_3622
mRNA
_3623
mRNA
_3624
mRNA
_3625
11989
11990
11991
11992
11993
growth on oleic acid
YNB Oleic Acid
-0.2
-1.1
-0.5
-0.7
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.9
-0.1
-0.7
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.1
-1.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-1.4
-0.3
+0.6
+0.1
growth on oleic acid
YNB Glucose
-0.4
-0.3
-0.2
-0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
-0.1
-0.5
+0.1
auxotrophy
YNB Glucose
-0.3
+0.0
-0.3
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.1
+0.3
-1.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.3
+1.0
-0.5
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.4
-0.7
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
+0.8
-0.6
-0.0
growth on ypd
YPD
+0.3
-0.1
+0.2
-0.6
+0.4
auxotrophy
Dropout Complete
-0.1
+0.0
-0.4
+1.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
-0.1
+0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.4
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
-0.0
+0.7
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
+0.5
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.3
-0.1
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.5
+1.0
+0.5
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