Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11989 and 11990 are separated by 534 nucleotides11990 and 11991 are separated by 1876 nucleotides11991 and 11992 are separated by 689 nucleotides11992 and 11993 are separated by 251 nucleotides mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989 mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990 mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624 11993
Group Condition mRNA_3621 mRNA_3622 mRNA_3623 mRNA_3624 mRNA_3625
11989 11990 11991 11992 11993
growth on oleic acid YNB Oleic Acid -0.2 -1.1 -0.5 -0.7 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.9 -0.1 -0.7 -0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.0 -0.1 +0.1 -1.4 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -1.4 -0.3 +0.6 +0.1
growth on oleic acid YNB Glucose -0.4 -0.3 -0.2 -0.3 +0.2
growth on ricinoleic acid YNB Glucose -0.4 +0.1 -0.1 -0.5 +0.1
auxotrophy YNB Glucose -0.3 +0.0 -0.3 +0.0 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.5 +0.1 +0.3 -1.1 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 +0.3 +1.0 -0.5 -0.7
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 +0.4 -0.7 +0.6
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 -0.1 +0.8 -0.6 -0.0
growth on ypd YPD +0.3 -0.1 +0.2 -0.6 +0.4
auxotrophy Dropout Complete -0.1 +0.0 -0.4 +1.3 -0.4
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.0 -0.1 +0.5 +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.2 +0.1 +0.4 -0.4 +0.3
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.0 -0.0 +0.7 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.1 -0.1 +0.4 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.2 +0.1 +0.7 +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.0 +0.5 +0.0 +0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 +0.3 -0.1 +0.6 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +0.2 +0.5 +1.0 +0.5
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