Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11990 and 11991 are separated by 1876 nucleotides
11991 and 11992 are separated by 689 nucleotides
11992 and 11993 are separated by 251 nucleotides
11993 and 11994 are separated by 391 nucleotides
mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381
11990
mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689
11991
mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590
11992
mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624
11993
mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198,016 to 198,652
11994
Group
Condition
mRNA
_3622
mRNA
_3623
mRNA
_3624
mRNA
_3625
mRNA
_3626
11990
11991
11992
11993
11994
growth on oleic acid
YNB Oleic Acid
-1.1
-0.5
-0.7
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.1
-0.7
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-1.4
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-1.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.4
+0.1
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.4
-0.3
+0.6
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.3
+0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.8
-0.6
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.5
+0.1
+0.3
auxotrophy
YNB Glucose
+0.0
-0.3
+0.0
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+1.0
-0.5
-0.7
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
-0.4
+0.3
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
+0.6
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
-0.7
+0.6
+0.5
growth on ypd
YPD
-0.1
+0.2
-0.6
+0.4
+1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
+0.5
+0.0
+0.8
auxotrophy
Dropout Complete
+0.0
-0.4
+1.3
-0.4
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
+0.7
+0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
+0.0
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.7
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
+1.0
+0.5
+0.2
remove
mRNA_3622
plot
remove
mRNA_3623
plot
remove
mRNA_3624
remove
mRNA_3625
plot
remove
mRNA_3626
plot