Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11990 and 11991 are separated by 1876 nucleotides11991 and 11992 are separated by 689 nucleotides11992 and 11993 are separated by 251 nucleotides11993 and 11994 are separated by 391 nucleotides mRNA_3622: 11990 - KOG0254 Predicted transporter (major facilitator superfamily), at 186,018 to 188,381 11990 mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689 11991 mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590 11992 mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624 11993 mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198,016 to 198,652 11994
Group Condition mRNA_3622 mRNA_3623 mRNA_3624 mRNA_3625 mRNA_3626
11990 11991 11992 11993 11994
growth on oleic acid YNB Oleic Acid -1.1 -0.5 -0.7 +0.2 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 -0.1 -0.7 -0.0 +0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.1 -1.4 -0.3 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.3 -1.1 -0.2 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.1 +0.4 +0.1 -1.3
growth on ricinoleic acid YNB Methylricinoleic Acid -1.4 -0.3 +0.6 +0.1 +0.2
growth on oleic acid YNB Glucose -0.3 -0.2 -0.3 +0.2 +0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.8 -0.6 -0.0 -0.3
growth on ricinoleic acid YNB Glucose +0.1 -0.1 -0.5 +0.1 +0.3
auxotrophy YNB Glucose +0.0 -0.3 +0.0 -0.1 +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +1.0 -0.5 -0.7 +0.6
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.4 -0.4 +0.3 +0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.1 +0.6 +0.2 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.4 -0.7 +0.6 +0.5
growth on ypd YPD -0.1 +0.2 -0.6 +0.4 +1.0
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.1 +0.5 +0.0 +0.8
auxotrophy Dropout Complete +0.0 -0.4 +1.3 -0.4 +0.8
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.0 +0.7 +0.2 +0.5
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.5 +0.0 +0.6 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.1 +0.7 +0.3 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.5 +1.0 +0.5 +0.2
remove
mRNA_3622
plot
remove
mRNA_3623
plot
remove
mRNA_3624
remove
mRNA_3625
plot
remove
mRNA_3626
plot