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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11991 and 11992 are separated by 689 nucleotides
11992 and 11993 are separated by 251 nucleotides
11993 and 11994 are separated by 391 nucleotides
11994 and 11995 are separated by 895 nucleotides
mRNA_3623: 11991 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 190,258 to 192,689
11991
mRNA_3624: 11992 - SUPERFAMILY--SSF52047, at 193,379 to 194,590
11992
mRNA_3625: 11993 - K01176 AMY, amyA, malS alpha-amylase, at 194,842 to 197,624
11993
mRNA_3626: 11994 - BLAST SH3 domain-containing protein [Rhizoctonia solani AG-..., at 198,016 to 198,652
11994
mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199,548 to 202,220
11995
Group
Condition
mRNA
_3623
mRNA
_3624
mRNA
_3625
mRNA
_3626
mRNA
_3627
11991
11992
11993
11994
11995
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.1
-0.2
-0.4
-0.5
growth on oleic acid
YNB Oleic Acid
-0.5
-0.7
+0.2
-0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.4
-0.3
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.4
+0.1
-1.3
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.3
+0.2
+0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.6
-0.0
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.5
+0.1
+0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.7
-0.0
+0.3
+0.2
auxotrophy
YNB Glucose
-0.3
+0.0
-0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
+0.2
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.6
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.5
-0.7
+0.6
+0.2
growth on ypd
YPD
+0.2
-0.6
+0.4
+1.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.4
+0.3
+0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.7
+0.6
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
+0.3
+0.3
-0.1
auxotrophy
Dropout Complete
-0.4
+1.3
-0.4
+0.8
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.7
+0.2
+0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.5
+0.0
+0.8
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.0
+0.6
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+1.0
+0.5
+0.2
-0.1
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