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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11996 and 11997 are separated by 84 nucleotides
11997 and 11998 are separated by 660 nucleotides
11998 and 11999 are separated by 365 nucleotides
11999 and 12000 are separated by 382 nucleotides
mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202,614 to 203,898
11996
mRNA_3629: 11997 - Hypothetical Protein, at 203,983 to 204,971
11997
mRNA_3630: 11998 - Hypothetical Protein, at 205,632 to 206,590
11998
mRNA_3631: 11999 - Hypothetical Protein, at 206,956 to 207,306
11999
mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563
12000
Group
Condition
mRNA
_3628
mRNA
_3629
mRNA
_3630
mRNA
_3631
mRNA
_3632
11996
11997
11998
11999
12000
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.0
-0.4
-2.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-1.0
+0.0
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
+0.0
-1.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
+0.1
-1.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.3
-0.7
-0.4
auxotrophy
Dropout Complete
+0.1
-0.5
+0.2
-0.5
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.2
+0.2
+0.7
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.4
+0.4
-0.8
+0.2
auxotrophy
YNB Glucose
+0.1
-0.4
+0.0
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.3
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-0.0
-0.5
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.4
-0.1
-0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.6
+0.4
+0.6
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
-1.1
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.4
-0.4
-0.1
+0.8
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
+0.3
+0.6
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.3
+0.1
+0.5
-0.1
growth on ypd
YPD
+0.3
+0.9
+0.6
+2.1
+0.4
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