Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11999 and 12000 are separated by 382 nucleotides12000 and 12001 are separated by 1483 nucleotides12001 and 12002 are separated by 409 nucleotides12002 and 12003 are separated by 162 nucleotides mRNA_3631: 11999 - Hypothetical Protein, at 206,956 to 207,306 11999 mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563 12000 mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567 12002 mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270 12003
Group Condition mRNA_3631 mRNA_3632 mRNA_3633 mRNA_3634 mRNA_3635
11999 12000 12001 12002 12003
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -2.6 +0.1 -0.2 -0.5 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -1.0 -0.3 +0.0 -0.3 -0.4
auxotrophy YNB Glucose 75mM Methionine -1.5 -0.4 -0.4 -0.0 +0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.4 -0.2 -0.6 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.4 -0.1 -0.0 -0.3 -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +0.1 +0.3 -0.4 -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.2 -0.2 +0.3 -0.3
growth on oleic acid YNB Glucose -0.3 -0.0 -0.4 +0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.7 -0.4 -0.4 +0.3 +0.5
auxotrophy YNB Glucose -0.6 -0.1 -0.4 +0.3 +0.4
auxotrophy Dropout Complete -0.5 -0.4 -0.3 +0.2 +0.7
ypd buoyancy 40 hrs Low Buoyancy -0.8 +0.2 +0.1 +0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.3 +0.0 +0.0 -0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.6 -0.3 +0.2 +0.2 -0.3
growth on ricinoleic acid YNB Glucose -0.2 +0.1 -0.0 +0.3 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.5 -0.1 -0.1 +0.5 -0.1
growth on oleic acid YNB Oleic Acid +0.8 -0.1 -0.3 -0.0 +0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.7 -0.6 +0.0 +0.1 +0.5
ypd buoyancy 40 hrs High Buoyancy +0.6 +0.3 -0.0 -0.0 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.6 +0.3 +0.5 -0.5
growth on ypd YPD +2.1 +0.4 +0.5 +0.1 +0.5
remove
mRNA_3631
plot
remove
mRNA_3632
plot
remove
mRNA_3633
remove
mRNA_3634
plot
remove
mRNA_3635
plot