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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11999 and 12000 are separated by 382 nucleotides
12000 and 12001 are separated by 1483 nucleotides
12001 and 12002 are separated by 409 nucleotides
12002 and 12003 are separated by 162 nucleotides
mRNA_3631: 11999 - Hypothetical Protein, at 206,956 to 207,306
11999
mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563
12000
mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295
12001
mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567
12002
mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270
12003
Group
Condition
mRNA
_3631
mRNA
_3632
mRNA
_3633
mRNA
_3634
mRNA
_3635
11999
12000
12001
12002
12003
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.6
+0.1
-0.2
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
-0.3
+0.0
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.5
-0.4
-0.4
-0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
-0.2
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.0
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
+0.3
-0.4
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.2
+0.3
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.0
-0.4
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.4
-0.4
+0.3
+0.5
auxotrophy
YNB Glucose
-0.6
-0.1
-0.4
+0.3
+0.4
auxotrophy
Dropout Complete
-0.5
-0.4
-0.3
+0.2
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.8
+0.2
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.0
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.3
+0.2
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.0
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
-0.1
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.8
-0.1
-0.3
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.6
+0.0
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.3
-0.0
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.6
+0.3
+0.5
-0.5
growth on ypd
YPD
+2.1
+0.4
+0.5
+0.1
+0.5
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