Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12000 and 12001 are separated by 1483 nucleotides12001 and 12002 are separated by 409 nucleotides12002 and 12003 are separated by 162 nucleotides12003 and 12004 are separated by 883 nucleotides mRNA_3632: 12000 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 207,689 to 209,563 12000 mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567 12002 mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270 12003 mRNA_3636: 12004 - K03238 EIF2S2 translation initiation factor 2 subunit 2, at 217,154 to 218,587 12004
Group Condition mRNA_3632 mRNA_3633 mRNA_3634 mRNA_3635 mRNA_3636
12000 12001 12002 12003 12004
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.0 -0.3 -0.4 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 -0.2 -0.6 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.3 -0.4 -0.7 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.0 -0.3 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.2 -0.5 -0.1 N.D.
growth on oleic acid YNB Glucose -0.0 -0.4 +0.0 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.2 +0.3 -0.3 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.4 -0.0 +0.4 N.D.
growth on oleic acid YNB Oleic Acid -0.1 -0.3 -0.0 +0.3 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.3 +0.2 +0.2 -0.3 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.6 +0.0 +0.1 +0.5 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.4 -0.4 +0.3 +0.5 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -0.1 +0.5 -0.1 N.D.
auxotrophy Dropout Complete -0.4 -0.3 +0.2 +0.7 N.D.
auxotrophy YNB Glucose -0.1 -0.4 +0.3 +0.4 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.0 +0.0 -0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.0 -0.0 +0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.1 +0.2 -0.1 N.D.
growth on ricinoleic acid YNB Glucose +0.1 -0.0 +0.3 +0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.6 +0.3 +0.5 -0.5 N.D.
growth on ypd YPD +0.4 +0.5 +0.1 +0.5 N.D.
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