Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12001 and 12002 are separated by 409 nucleotides12002 and 12003 are separated by 162 nucleotides12003 and 12004 are separated by 883 nucleotides12004 and 12005 are separated by 241 nucleotides mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295 12001 mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567 12002 mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270 12003 mRNA_3636: 12004 - K03238 EIF2S2 translation initiation factor 2 subunit 2, at 217,154 to 218,587 12004 mRNA_3637: 12005 - KOG0730 AAA+-type ATPase, at 218,829 to 220,926 12005
Group Condition mRNA_3633 mRNA_3634 mRNA_3635 mRNA_3636 mRNA_3637
12001 12002 12003 12004 12005
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.4 -0.7 N.D. -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.5 -0.1 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 -0.3 -0.4 N.D. -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 -0.3 -0.3 N.D. +0.0
growth on oleic acid YNB Glucose -0.4 +0.0 -0.1 N.D. -0.0
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.6 +0.3 N.D. +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 +0.5 -0.5 N.D. -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.3 -0.3 N.D. -0.1
growth on oleic acid YNB Oleic Acid -0.3 -0.0 +0.3 N.D. -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.0 -0.0 N.D. -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.5 -0.1 N.D. -0.2
ypd buoyancy 40 hrs Low Buoyancy +0.1 +0.2 -0.1 N.D. -0.1
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.0 +0.1 N.D. +0.1
auxotrophy YNB Glucose 75mM Methionine -0.4 -0.0 +0.4 N.D. +0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.2 +0.2 -0.3 N.D. +0.2
auxotrophy YNB Glucose -0.4 +0.3 +0.4 N.D. +0.2
auxotrophy YNB Glucose 75mM Arginine -0.4 +0.3 +0.5 N.D. +0.3
growth on ricinoleic acid YNB Glucose -0.0 +0.3 +0.3 N.D. +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.1 +0.5 N.D. +0.1
growth on ypd YPD +0.5 +0.1 +0.5 N.D. -0.3
auxotrophy Dropout Complete -0.3 +0.2 +0.7 N.D. +0.4
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