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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12001 and 12002 are separated by 409 nucleotides
12002 and 12003 are separated by 162 nucleotides
12003 and 12004 are separated by 883 nucleotides
12004 and 12005 are separated by 241 nucleotides
mRNA_3633: 12001 - KOG1074 Transcriptional repressor SALM, at 211,047 to 213,295
12001
mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567
12002
mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270
12003
mRNA_3636: 12004 - K03238 EIF2S2 translation initiation factor 2 subunit 2, at 217,154 to 218,587
12004
mRNA_3637: 12005 - KOG0730 AAA+-type ATPase, at 218,829 to 220,926
12005
Group
Condition
mRNA
_3633
mRNA
_3634
mRNA
_3635
mRNA
_3636
mRNA
_3637
12001
12002
12003
12004
12005
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.4
-0.7
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.3
-0.4
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
-0.3
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.4
+0.0
-0.1
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.5
-0.5
N.D.
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
-0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
+0.3
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.5
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.4
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose
-0.4
+0.3
+0.4
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.3
+0.5
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.1
+0.5
N.D.
+0.1
growth on ypd
YPD
+0.5
+0.1
+0.5
N.D.
-0.3
auxotrophy
Dropout Complete
-0.3
+0.2
+0.7
N.D.
+0.4
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