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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12002 and 12003 are separated by 162 nucleotides
12003 and 12004 are separated by 883 nucleotides
12004 and 12005 are separated by 241 nucleotides
12005 and 12006 are separated by 812 nucleotides
mRNA_3634: 12002 - KOG2456 Aldehyde dehydrogenase, at 213,705 to 215,567
12002
mRNA_3635: 12003 - BLAST similar to An07g01410 [Aspergillus kawachii IFO 4308], at 215,730 to 216,270
12003
mRNA_3636: 12004 - K03238 EIF2S2 translation initiation factor 2 subunit 2, at 217,154 to 218,587
12004
mRNA_3637: 12005 - KOG0730 AAA+-type ATPase, at 218,829 to 220,926
12005
mRNA_3638: 12006 - KOG1721 FOG Zn-finger, at 221,739 to 224,481
12006
Group
Condition
mRNA
_3634
mRNA
_3635
mRNA
_3636
mRNA
_3637
mRNA
_3638
12002
12003
12004
12005
12006
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.7
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.5
N.D.
-0.7
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.4
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.3
N.D.
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
N.D.
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
N.D.
+0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.3
N.D.
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
N.D.
+0.1
+0.0
growth on ypd
YPD
+0.1
+0.5
N.D.
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.4
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.5
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.5
N.D.
+0.3
-0.1
auxotrophy
YNB Glucose
+0.3
+0.4
N.D.
+0.2
-0.0
auxotrophy
Dropout Complete
+0.2
+0.7
N.D.
+0.4
-0.2
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