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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12004 and 12005 are separated by 241 nucleotides
12005 and 12006 are separated by 812 nucleotides
12006 and 12007 are separated by 1201 nucleotides
12007 and 12008 are separated by 784 nucleotides
mRNA_3636: 12004 - K03238 EIF2S2 translation initiation factor 2 subunit 2, at 217,154 to 218,587
12004
mRNA_3637: 12005 - KOG0730 AAA+-type ATPase, at 218,829 to 220,926
12005
mRNA_3638: 12006 - KOG1721 FOG Zn-finger, at 221,739 to 224,481
12006
mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225,683 to 228,983
12007
mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229,768 to 230,624
12008
Group
Condition
mRNA
_3636
mRNA
_3637
mRNA
_3638
mRNA
_3639
mRNA
_3640
12004
12005
12006
12007
12008
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.6
-2.2
+0.0
growth on ypd
YPD
N.D.
-0.3
-0.1
-2.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.2
-1.6
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.3
-2.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
-1.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
-0.9
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
-0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.1
-0.9
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.1
-0.8
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.2
-0.7
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.1
-0.5
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.0
-0.1
+0.0
auxotrophy
YNB Glucose
N.D.
+0.2
-0.0
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.2
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.4
+0.9
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.2
+0.6
+0.3
auxotrophy
Dropout Complete
N.D.
+0.4
-0.2
+1.0
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.4
+1.7
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.0
+1.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.1
+1.7
+0.3
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