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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12006 and 12007 are separated by 1201 nucleotides
12007 and 12008 are separated by 784 nucleotides
12008 and 12009 are separated by 33 nucleotides
12009 and 12010 are separated by 264 nucleotides
mRNA_3638: 12006 - KOG1721 FOG Zn-finger, at 221,739 to 224,481
12006
mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225,683 to 228,983
12007
mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229,768 to 230,624
12008
mRNA_3641: 12009 - K17615 PPG1 serine/threonine-protein phosphatase PPG1, at 230,658 to 231,997
12009
mRNA_3642: 12010 - K08818 CDC2L cell division cycle 2-like, at 232,262 to 233,977
12010
Group
Condition
mRNA
_3638
mRNA
_3639
mRNA
_3640
mRNA
_3641
mRNA
_3642
12006
12007
12008
12009
12010
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-2.0
+0.0
-4.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-2.2
+0.0
-1.7
N.D.
growth on ypd
YPD
-0.1
-2.4
+0.1
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.9
-0.0
-1.8
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.2
-2.7
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.9
+0.0
-1.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-1.6
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-1.2
+0.2
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.7
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.6
+0.1
+0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose
-0.0
-0.3
+0.2
-0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.8
+0.0
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
+0.2
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.6
+0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.9
+0.5
+0.2
N.D.
auxotrophy
Dropout Complete
-0.2
+1.0
+0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+1.7
+0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
+1.7
+0.1
+0.6
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
+1.4
+0.4
+1.9
N.D.
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