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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12007 and 12008 are separated by 784 nucleotides
12008 and 12009 are separated by 33 nucleotides
12009 and 12010 are separated by 264 nucleotides
12010 and 12011 are separated by 487 nucleotides
mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225,683 to 228,983
12007
mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229,768 to 230,624
12008
mRNA_3641: 12009 - K17615 PPG1 serine/threonine-protein phosphatase PPG1, at 230,658 to 231,997
12009
mRNA_3642: 12010 - K08818 CDC2L cell division cycle 2-like, at 232,262 to 233,977
12010
mRNA_3643: 12011 - HMMPfam-Protein of unknown function (DUF1765)-PF08578, at 234,465 to 241,327
12011
Group
Condition
mRNA
_3639
mRNA
_3640
mRNA
_3641
mRNA
_3642
mRNA
_3643
12007
12008
12009
12010
12011
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
+0.0
-4.2
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
+0.0
-1.7
N.D.
-0.3
growth on ypd
YPD
-2.4
+0.1
-0.6
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.0
-1.8
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-2.7
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.9
+0.0
-1.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.6
-0.1
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-1.2
+0.2
-0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.1
-0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose
-0.3
+0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.1
+0.7
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.3
+0.2
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.8
+0.0
+0.9
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
+0.4
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.5
+0.2
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.3
+0.2
N.D.
+0.0
auxotrophy
Dropout Complete
+1.0
+0.3
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.7
+0.3
-0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
+1.7
+0.1
+0.6
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+1.4
+0.4
+1.9
N.D.
-0.2
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