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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12010 and 12011 are separated by 487 nucleotides
12011 and 12012 are separated by 1327 nucleotides
12012 and 12013 are separated by 990 nucleotides
12013 and 12014 are separated by 1974 nucleotides
mRNA_3642: 12010 - K08818 CDC2L cell division cycle 2-like, at 232,262 to 233,977
12010
mRNA_3643: 12011 - HMMPfam-Protein of unknown function (DUF1765)-PF08578, at 234,465 to 241,327
12011
mRNA_3644: 12012 - Hypothetical Protein, at 242,655 to 243,950
12012
mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244,941 to 247,626
12013
mRNA_3646: 12014 - Hypothetical Protein, at 249,601 to 250,328
12014
Group
Condition
mRNA
_3642
mRNA
_3643
mRNA
_3644
mRNA
_3645
mRNA
_3646
12010
12011
12012
12013
12014
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.6
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.0
N.D.
-0.2
auxotrophy
Dropout Complete
N.D.
-0.2
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.5
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose
N.D.
+0.0
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.5
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.3
N.D.
-0.1
growth on ypd
YPD
N.D.
-0.2
+0.7
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.7
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.7
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
+0.5
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.2
N.D.
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.7
N.D.
+0.8
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