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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12011 and 12012 are separated by 1327 nucleotides
12012 and 12013 are separated by 990 nucleotides
12013 and 12014 are separated by 1974 nucleotides
12014 and 12015 are separated by 455 nucleotides
mRNA_3643: 12011 - HMMPfam-Protein of unknown function (DUF1765)-PF08578, at 234,465 to 241,327
12011
mRNA_3644: 12012 - Hypothetical Protein, at 242,655 to 243,950
12012
mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244,941 to 247,626
12013
mRNA_3646: 12014 - Hypothetical Protein, at 249,601 to 250,328
12014
mRNA_3647: 12015 - Hypothetical Protein, at 250,784 to 251,947
12015
Group
Condition
mRNA
_3643
mRNA
_3644
mRNA
_3645
mRNA
_3646
mRNA
_3647
12011
12012
12013
12014
12015
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.1
N.D.
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
-0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
-0.2
-0.2
auxotrophy
Dropout Complete
-0.2
+0.2
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose
+0.0
+0.1
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
N.D.
-0.1
+0.3
growth on ypd
YPD
-0.2
+0.7
N.D.
-0.1
+0.0
growth on oleic acid
YNB Glucose
+0.0
+0.2
N.D.
-0.1
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+0.5
N.D.
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.7
N.D.
-0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.7
N.D.
+0.8
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.7
N.D.
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.3
N.D.
+0.2
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
N.D.
+0.9
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.5
N.D.
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.5
N.D.
+0.3
+0.5
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