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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12013 and 12014 are separated by 1974 nucleotides
12014 and 12015 are separated by 455 nucleotides
12015 and 12016 are separated by 598 nucleotides
12016 and 12017 are separated by 599 nucleotides
mRNA_3645: 12013 - K14439 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1, at 244,941 to 247,626
12013
mRNA_3646: 12014 - Hypothetical Protein, at 249,601 to 250,328
12014
mRNA_3647: 12015 - Hypothetical Protein, at 250,784 to 251,947
12015
mRNA_3648: 12016 - K15448 TRM112, TRMT112 multifunctional methyltransferase subunit TRM112, at 252,546 to 253,342
12016
mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253,942 to 255,854
12017
Group
Condition
mRNA
_3645
mRNA
_3646
mRNA
_3647
mRNA
_3648
mRNA
_3649
12013
12014
12015
12016
12017
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.9
-0.0
N.D.
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.5
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
N.D.
+0.5
growth on ypd
YPD
N.D.
-0.1
+0.0
N.D.
+0.4
auxotrophy
Dropout Complete
N.D.
-0.3
+0.1
N.D.
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.6
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.2
N.D.
+0.8
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.4
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.2
N.D.
+1.0
auxotrophy
YNB Glucose
N.D.
-0.1
+0.2
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
-0.2
N.D.
+1.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.4
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.4
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.5
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.5
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.8
-0.3
N.D.
+1.4
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