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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12015 and 12016 are separated by 598 nucleotides
12016 and 12017 are separated by 599 nucleotides
12017 and 12018 are separated by 946 nucleotides
12018 and 12019 are separated by 222 nucleotides
mRNA_3647: 12015 - Hypothetical Protein, at 250,784 to 251,947
12015
mRNA_3648: 12016 - K15448 TRM112, TRMT112 multifunctional methyltransferase subunit TRM112, at 252,546 to 253,342
12016
mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253,942 to 255,854
12017
mRNA_3650: 12018 - Hypothetical Protein, at 256,801 to 258,115
12018
mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258,338 to 258,829
12019
Group
Condition
mRNA
_3647
mRNA
_3648
mRNA
_3649
mRNA
_3650
mRNA
_3651
12015
12016
12017
12018
12019
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.3
-0.3
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.6
+0.3
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.8
-0.4
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.3
-0.2
-0.0
auxotrophy
YNB Glucose
+0.2
N.D.
+0.6
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+1.0
-0.3
-0.4
auxotrophy
Dropout Complete
+0.1
N.D.
+0.5
-0.3
-0.2
growth on ypd
YPD
+0.0
N.D.
+0.4
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.6
N.D.
-0.0
-0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.8
-0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.5
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.4
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
+1.0
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
+0.0
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
+0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
+0.0
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.1
+0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
-0.0
+0.3
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+1.4
+0.4
-0.0
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