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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12017 and 12018 are separated by 946 nucleotides
12018 and 12019 are separated by 222 nucleotides
12019 and 12020 are separated by 632 nucleotides
12020 and 12021 are separated by 125 nucleotides
mRNA_3649: 12017 - HMMPfam-Protein of unknown function, DUF604-PF04646, at 253,942 to 255,854
12017
mRNA_3650: 12018 - Hypothetical Protein, at 256,801 to 258,115
12018
mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258,338 to 258,829
12019
mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259,462 to 260,271
12020
mRNA_3653: 12021 - KOG2437 Muskelin, at 260,397 to 263,923
12021
Group
Condition
mRNA
_3649
mRNA
_3650
mRNA
_3651
mRNA
_3652
mRNA
_3653
12017
12018
12019
12020
12021
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.3
-1.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.1
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.2
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.3
-0.4
+0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
-0.0
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.4
-0.1
-0.3
-0.3
+0.0
auxotrophy
Dropout Complete
+0.5
-0.3
-0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.4
-0.2
-0.3
auxotrophy
YNB Glucose
+0.6
-0.5
-0.3
+0.1
+0.0
growth on ypd
YPD
+0.4
-0.0
-0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.4
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
+0.4
+0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.2
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
-0.4
-0.5
+0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
-0.3
-0.4
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
+1.0
-0.3
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
+0.1
-0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.8
-0.0
-0.3
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.3
+0.5
-0.6
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.1
+0.1
+0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
+0.4
-0.0
-0.5
+0.3
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