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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12020 and 12021 are separated by 125 nucleotides
12021 and 12022 are separated by 5434 nucleotides
12022 and 12023 are separated by 217 nucleotides
12023 and 12024 are separated by 30 nucleotides
mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259,462 to 260,271
12020
mRNA_3653: 12021 - KOG2437 Muskelin, at 260,397 to 263,923
12021
mRNA_3654: 12022 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 269,358 to 271,210
12022
mRNA_3655: 12023 - KOG1721 FOG Zn-finger, at 271,428 to 272,912
12023
mRNA_3656: 12024 - Hypothetical Protein, at 272,943 to 273,266
12024
Group
Condition
mRNA
_3652
mRNA
_3653
mRNA
_3654
mRNA
_3655
mRNA
_3656
12020
12021
12022
12023
12024
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
-0.1
-0.1
-1.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.3
-0.3
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
-0.1
-0.2
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.1
-0.3
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.4
+0.0
+0.2
-1.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.3
-0.2
-0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.0
-0.4
-0.3
auxotrophy
Dropout Complete
-0.1
-0.1
+0.1
-0.1
-0.6
growth on oleic acid
YNB Glucose
-0.3
+0.0
+0.1
+0.1
-0.7
growth on ricinoleic acid
YNB Glucose
-0.2
-0.0
+0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
-0.1
+0.1
-0.6
auxotrophy
YNB Glucose
+0.1
+0.0
+0.1
-0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
+0.1
+0.3
-0.6
growth on ypd
YPD
-0.1
-0.0
-0.2
-0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.2
-0.2
+0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.0
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
-0.2
-0.1
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.6
-0.2
+0.1
+1.6
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