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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12027 and 12028 are separated by 757 nucleotides
12028 and 12029 overlap by 8 nucleotides
12029 and 12030 are separated by 123 nucleotides
12030 and 12031 are separated by 177 nucleotides
mRNA_3659: 12027 - Hypothetical Protein, at 283,501 to 284,501
12027
mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285,259 to 286,189
12028
mRNA_3661: 12029 - Hypothetical Protein, at 286,182 to 286,643
12029
mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286,767 to 288,003
12030
mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288,181 to 289,942
12031
Group
Condition
mRNA
_3659
mRNA
_3660
mRNA
_3661
mRNA
_3662
mRNA
_3663
12027
12028
12029
12030
12031
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.9
-0.4
+0.0
-2.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
-0.4
+0.2
-3.1
auxotrophy
YNB Glucose
-0.0
+0.0
-0.3
+0.0
-2.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.9
-0.1
+0.1
-2.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.6
+0.0
-0.1
-2.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.1
-0.2
-0.1
-3.3
growth on oleic acid
YNB Glucose
+0.3
-0.4
-0.1
+0.0
-2.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-1.2
-0.2
-0.1
-0.9
growth on ricinoleic acid
YNB Glucose
+0.8
+0.0
-0.1
-0.0
-2.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
+0.0
-0.1
-1.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.6
-0.0
-0.5
auxotrophy
Dropout Complete
+0.1
-0.2
-0.4
+0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.3
-0.2
+0.3
-0.9
growth on ypd
YPD
+0.2
-0.3
-0.4
+0.1
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.2
+0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
-0.3
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
-0.2
-0.0
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.7
-0.5
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.3
+0.0
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.5
+0.1
+0.0
+1.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.4
+0.0
+0.0
+0.5
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