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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12029 and 12030 are separated by 123 nucleotides
12030 and 12031 are separated by 177 nucleotides
12031 and 12032 are separated by 901 nucleotides
12032 and 12033 are separated by 105 nucleotides
mRNA_3661: 12029 - Hypothetical Protein, at 286,182 to 286,643
12029
mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286,767 to 288,003
12030
mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288,181 to 289,942
12031
mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290,844 to 292,094
12032
mRNA_3665: 12033 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083, at 292,200 to 295,663
12033
Group
Condition
mRNA
_3661
mRNA
_3662
mRNA
_3663
mRNA
_3664
mRNA
_3665
12029
12030
12031
12032
12033
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
-2.3
-4.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.0
-2.4
-4.2
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-2.8
-3.3
-0.1
auxotrophy
YNB Glucose
-0.3
+0.0
-2.9
-2.8
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
-3.1
-2.5
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.9
-4.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-2.6
-2.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.1
-0.2
-4.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-3.3
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-1.3
-2.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
-0.9
-2.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.0
-0.5
-1.7
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
-2.3
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
+0.3
-2.2
+0.6
growth on ypd
YPD
-0.4
+0.1
-0.5
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+1.0
-1.7
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.4
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
+0.5
-0.2
-0.1
auxotrophy
Dropout Complete
-0.4
+0.0
-0.6
+1.7
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.5
+0.9
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.5
+0.5
+0.1
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