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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12031 and 12032 are separated by 901 nucleotides
12032 and 12033 are separated by 105 nucleotides
12033 and 12034 are separated by 1647 nucleotides
12034 and 12035 are separated by 233 nucleotides
mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288,181 to 289,942
12031
mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290,844 to 292,094
12032
mRNA_3665: 12033 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083, at 292,200 to 295,663
12033
mRNA_3666: 12034 - K16055 TPS trehalose 6-phosphate synthase/phosphatase, at 297,311 to 299,921
12034
mRNA_3667: 12035 - KOG3455 Predicted membrane protein, at 300,155 to 301,036
12035
Group
Condition
mRNA
_3663
mRNA
_3664
mRNA
_3665
mRNA
_3666
mRNA
_3667
12031
12032
12033
12034
12035
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-4.4
+0.2
-3.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-4.5
+0.3
-1.1
N.D.
growth on oleic acid
YNB Glucose
-2.4
-4.2
-0.2
+0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.3
-4.1
-0.2
+0.5
N.D.
growth on ricinoleic acid
YNB Glucose
-2.8
-3.3
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-3.1
-2.5
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose
-2.9
-2.8
-0.2
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.3
-2.1
-0.4
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-3.3
-0.6
-0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.6
-2.2
+0.1
+1.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
-2.3
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.3
+0.1
+0.0
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-1.7
-0.1
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-2.2
+0.6
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-1.7
-0.0
-0.4
N.D.
growth on ypd
YPD
-0.5
-0.1
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.5
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.2
-0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.5
+0.9
-0.2
+0.6
N.D.
auxotrophy
Dropout Complete
-0.6
+1.7
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.5
+0.1
-0.1
N.D.
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