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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12032 and 12033 are separated by 105 nucleotides
12033 and 12034 are separated by 1647 nucleotides
12034 and 12035 are separated by 233 nucleotides
12035 and 12036 are separated by 121 nucleotides
mRNA_3664: 12032 - K15111 SLC25A26 solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26, at 290,844 to 292,094
12032
mRNA_3665: 12033 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865,SUPERFAMILY--SSF144083, at 292,200 to 295,663
12033
mRNA_3666: 12034 - K16055 TPS trehalose 6-phosphate synthase/phosphatase, at 297,311 to 299,921
12034
mRNA_3667: 12035 - KOG3455 Predicted membrane protein, at 300,155 to 301,036
12035
mRNA_3668: 12036 - K08870 TWF twinfilin, at 301,158 to 305,676
12036
Group
Condition
mRNA
_3664
mRNA
_3665
mRNA
_3666
mRNA
_3667
mRNA
_3668
12032
12033
12034
12035
12036
facs on lipid accumulation
Sorted High BODIPY Gate
-4.4
+0.2
-3.3
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-4.5
+0.3
-1.1
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-4.1
-0.2
+0.5
N.D.
+0.1
growth on oleic acid
YNB Glucose
-4.2
-0.2
+0.6
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-3.3
-0.1
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-2.1
-0.4
-0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-2.5
-0.3
+0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.3
-0.1
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
-2.8
-0.2
+0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.7
-0.0
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-2.2
+0.6
-0.2
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.7
-0.1
+0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.2
+0.1
+1.0
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.2
+0.0
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.1
-0.1
N.D.
-0.1
growth on ypd
YPD
-0.1
+0.0
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.3
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.1
-0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.9
-0.2
+0.6
N.D.
+0.2
auxotrophy
Dropout Complete
+1.7
-0.3
+0.2
N.D.
+0.1
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