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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12034 and 12035 are separated by 233 nucleotides
12035 and 12036 are separated by 121 nucleotides
12036 and 12037 are separated by 164 nucleotides
12037 and 12038 are separated by 170 nucleotides
mRNA_3666: 12034 - K16055 TPS trehalose 6-phosphate synthase/phosphatase, at 297,311 to 299,921
12034
mRNA_3667: 12035 - KOG3455 Predicted membrane protein, at 300,155 to 301,036
12035
mRNA_3668: 12036 - K08870 TWF twinfilin, at 301,158 to 305,676
12036
mRNA_3669: 12037 - KOG1756 Histone 2A, at 305,841 to 306,858
12037
mRNA_3670: 12038 - HMMPfam-GRIP-related Arf-binding domain-PF10375,ProSiteProfiles-GRIP domain profile.-PS50913, at 307,029 to 308,993
12038
Group
Condition
mRNA
_3666
mRNA
_3667
mRNA
_3668
mRNA
_3669
mRNA
_3670
12034
12035
12036
12037
12038
facs on lipid accumulation
Sorted High BODIPY Gate
-3.3
N.D.
+0.0
+0.9
N.D.
growth on ypd
YPD
-0.3
N.D.
-0.1
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
N.D.
-0.0
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.1
+0.5
N.D.
auxotrophy
Dropout Complete
+0.2
N.D.
+0.1
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.4
+0.3
N.D.
auxotrophy
YNB Glucose
+0.5
N.D.
+0.1
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.6
N.D.
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
+0.9
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
+0.2
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
N.D.
+0.2
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
+0.1
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
N.D.
+0.3
+0.1
N.D.
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