Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12038 and 12039 are separated by 314 nucleotides12039 and 12040 are separated by 248 nucleotides12040 and 12041 are separated by 1450 nucleotides12041 and 12042 are separated by 535 nucleotides mRNA_3670: 12038 - HMMPfam-GRIP-related Arf-binding domain-PF10375,ProSiteProfiles-GRIP domain profile.-PS50913, at 307,029 to 308,993 12038 mRNA_3671: 12039 - K07562 NMD3 nonsense-mediated mRNA decay protein 3, at 309,308 to 311,181 12039 mRNA_3672: 12040 - BLAST putative ribonuclease mrp protein subunit rmp1 [Diapo..., at 311,430 to 311,771 12040 mRNA_3673: 12041 - K11251 H2A histone H2A, at 313,222 to 314,004 12041 mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836 12042
Group Condition mRNA_3670 mRNA_3671 mRNA_3672 mRNA_3673 mRNA_3674
12038 12039 12040 12041 12042
ypd buoyancy 40 hrs No Buoyancy Separation N.D. N.D. N.D. -0.4 -1.1
growth on ypd YPD N.D. N.D. N.D. -0.4 -0.2
ypd buoyancy 40 hrs Low Buoyancy N.D. N.D. N.D. -0.3 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid N.D. N.D. N.D. -0.2 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. N.D. N.D. -0.1 -0.3
facs on lipid accumulation Sorted High BODIPY Gate N.D. N.D. N.D. -0.4 -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. N.D. N.D. +0.0 -0.4
ypd buoyancy 40 hrs High Buoyancy N.D. N.D. N.D. -0.2 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate N.D. N.D. N.D. -0.5 +0.2
ypd buoyancy 40 hrs Median Buoyancy N.D. N.D. N.D. -0.1 -0.0
growth on oleic acid YNB Oleic Acid N.D. N.D. N.D. -0.2 +0.1
facs on lipid accumulation Sorted No BODIPY Gate N.D. N.D. N.D. +0.1 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. N.D. N.D. +0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. N.D. N.D. +0.3 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. N.D. N.D. -0.0 +0.2
growth on ricinoleic acid YNB Glucose N.D. N.D. N.D. -0.1 +0.3
growth on oleic acid YNB Glucose N.D. N.D. N.D. +0.2 +0.1
auxotrophy YNB Glucose 75mM Arginine N.D. N.D. N.D. +0.1 +0.5
auxotrophy YNB Glucose N.D. N.D. N.D. +0.3 +0.4
auxotrophy YNB Glucose 75mM Methionine N.D. N.D. N.D. +0.4 +0.5
auxotrophy Dropout Complete N.D. N.D. N.D. +0.5 +0.5
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