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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12039 and 12040 are separated by 248 nucleotides
12040 and 12041 are separated by 1450 nucleotides
12041 and 12042 are separated by 535 nucleotides
12042 and 12043 are separated by 477 nucleotides
mRNA_3671: 12039 - K07562 NMD3 nonsense-mediated mRNA decay protein 3, at 309,308 to 311,181
12039
mRNA_3672: 12040 - BLAST putative ribonuclease mrp protein subunit rmp1 [Diapo..., at 311,430 to 311,771
12040
mRNA_3673: 12041 - K11251 H2A histone H2A, at 313,222 to 314,004
12041
mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836
12042
mRNA_3675: 12043 - K11251 H2A histone H2A, at 317,314 to 317,987
12043
Group
Condition
mRNA
_3671
mRNA
_3672
mRNA
_3673
mRNA
_3674
mRNA
_3675
12039
12040
12041
12042
12043
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-1.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
-0.3
-0.3
growth on ypd
YPD
N.D.
N.D.
-0.4
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.5
+0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
-0.1
+0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.5
+0.5
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
+0.5
-0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.3
+0.4
+0.4
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