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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12041 and 12042 are separated by 535 nucleotides
12042 and 12043 are separated by 477 nucleotides
12043 and 12044 are separated by 1433 nucleotides
12044 and 12045 are separated by 482 nucleotides
mRNA_3673: 12041 - K11251 H2A histone H2A, at 313,222 to 314,004
12041
mRNA_3674: 12042 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 314,540 to 316,836
12042
mRNA_3675: 12043 - K11251 H2A histone H2A, at 317,314 to 317,987
12043
mRNA_3676: 12044 - K11833 USP2_21 ubiquitin carboxyl-terminal hydrolase 2/21, at 319,421 to 320,803
12044
mRNA_3677: 12045 - KOG0266 WD40 repeat-containing protein, at 321,286 to 323,880
12045
Group
Condition
mRNA
_3673
mRNA
_3674
mRNA
_3675
mRNA
_3676
mRNA
_3677
12041
12042
12043
12044
12045
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
-0.3
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.3
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.1
+0.4
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.0
+0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.4
-0.0
N.D.
-0.1
growth on ypd
YPD
-0.4
-0.2
+0.1
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
-0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
+0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
-0.1
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
-0.3
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.2
+0.1
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.5
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
+0.3
N.D.
-0.1
auxotrophy
Dropout Complete
+0.5
+0.5
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.0
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.7
N.D.
+0.3
auxotrophy
YNB Glucose
+0.3
+0.4
+0.4
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
-0.0
N.D.
+1.1
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