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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12045 and 12046 are separated by 719 nucleotides
12046 and 12047 are separated by 37 nucleotides
12047 and 12048 are separated by 165 nucleotides
12048 and 12049 are separated by 139 nucleotides
mRNA_3677: 12045 - KOG0266 WD40 repeat-containing protein, at 321,286 to 323,880
12045
mRNA_3678: 12046 - K14530 RPP40 ribonucleases P/MRP protein subunit RPP40, at 324,600 to 326,289
12046
mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326,327 to 327,835
12047
mRNA_3680: 12048 - Hypothetical Protein, at 328,001 to 330,038
12048
mRNA_3681: 12049 - Hypothetical Protein, at 330,178 to 331,991
12049
Group
Condition
mRNA
_3677
mRNA
_3678
mRNA
_3679
mRNA
_3680
mRNA
_3681
12045
12046
12047
12048
12049
auxotrophy
YNB Glucose
-0.4
N.D.
-0.1
-1.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
N.D.
+0.1
-0.8
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
N.D.
-0.8
-1.3
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
+0.2
-0.6
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.4
-1.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.1
N.D.
-1.1
-0.3
-0.5
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.1
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.0
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
-0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.5
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
N.D.
+0.2
-0.7
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
-0.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.2
+0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.0
+0.2
-0.0
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.0
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
+0.1
+0.2
growth on ypd
YPD
+0.0
N.D.
-0.1
+0.6
+0.4
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