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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12047 and 12048 are separated by 165 nucleotides
12048 and 12049 are separated by 139 nucleotides
12049 and 12050 are separated by 815 nucleotides
12050 and 12051 are separated by 272 nucleotides
mRNA_3679: 12047 - K02370 EXTL3 alpha-1,4-N-acetylglucosaminyltransferase EXTL3, at 326,327 to 327,835
12047
mRNA_3680: 12048 - Hypothetical Protein, at 328,001 to 330,038
12048
mRNA_3681: 12049 - Hypothetical Protein, at 330,178 to 331,991
12049
mRNA_3682: 12050 - K07203 MTOR, FRAP, TOR serine/threonine-protein kinase mTOR, at 332,807 to 341,262
12050
mRNA_3683: 12051 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 341,535 to 343,207
12051
Group
Condition
mRNA
_3679
mRNA
_3680
mRNA
_3681
mRNA
_3682
mRNA
_3683
12047
12048
12049
12050
12051
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-1.3
-0.1
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-0.3
-0.5
N.D.
-0.1
auxotrophy
YNB Glucose
-0.1
-1.4
+0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.8
-0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
-0.6
-0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-1.0
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
-0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.1
N.D.
-0.2
auxotrophy
Dropout Complete
-0.1
-0.5
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.3
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
+0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.1
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+0.3
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.1
+0.3
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.4
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.2
N.D.
+0.2
growth on ypd
YPD
-0.1
+0.6
+0.4
N.D.
-0.0
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