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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12051 and 12052 are separated by 155 nucleotides
12052 and 12053 are separated by 365 nucleotides
12053 and 12054 are separated by 146 nucleotides
12054 and 12055 are separated by 423 nucleotides
mRNA_3683: 12051 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 341,535 to 343,207
12051
mRNA_3684: 12052 - K05955 FNTA protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha, at 343,363 to 344,847
12052
mRNA_3685: 12053 - KOG4212 RNA-binding protein hnRNP-M, at 345,213 to 348,082
12053
mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348,229 to 349,499
12054
mRNA_3687: 12055 - K14837 NOP12 nucleolar protein 12, at 349,923 to 352,122
12055
Group
Condition
mRNA
_3683
mRNA
_3684
mRNA
_3685
mRNA
_3686
mRNA
_3687
12051
12052
12053
12054
12055
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
+0.2
-2.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-1.0
+0.0
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-1.0
+0.2
-0.9
growth on ypd
YPD
-0.0
N.D.
-0.3
-0.3
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-1.4
+0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.7
-0.2
-0.0
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.2
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.9
+0.3
+0.7
auxotrophy
Dropout Complete
+0.0
N.D.
+0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.1
-0.0
+0.3
auxotrophy
YNB Glucose
-0.0
N.D.
+0.2
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.0
-0.2
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.8
+0.3
+1.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.1
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
-0.1
+0.1
+0.8
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
+0.4
-0.4
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
-0.2
+1.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
+0.1
+1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.0
-0.1
+1.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
-0.6
+0.3
+1.3
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