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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12054 and 12055 are separated by 423 nucleotides
12055 and 12056 are separated by 160 nucleotides
12056 and 12057 are separated by 253 nucleotides
12057 and 12058 are separated by 498 nucleotides
mRNA_3686: 12054 - SUPERFAMILY--SSF54695, at 348,229 to 349,499
12054
mRNA_3687: 12055 - K14837 NOP12 nucleolar protein 12, at 349,923 to 352,122
12055
mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352,283 to 353,789
12056
mRNA_3689: 12057 - Hypothetical Protein, at 354,043 to 355,679
12057
mRNA_3690: 12058 - BLAST Ser/Thr protein kinase [Mucor ambiguus], at 356,178 to 360,570
12058
Group
Condition
mRNA
_3686
mRNA
_3687
mRNA
_3688
mRNA
_3689
mRNA
_3690
12054
12055
12056
12057
12058
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-2.5
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
-1.5
N.D.
-0.1
growth on ypd
YPD
-0.3
-0.7
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.9
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.7
-0.6
N.D.
-0.1
auxotrophy
Dropout Complete
+0.2
-0.1
+0.0
N.D.
-0.3
auxotrophy
YNB Glucose
-0.0
+0.1
-0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.6
+0.1
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
-0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.7
-0.5
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.9
-0.0
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
-0.3
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.0
+0.3
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
+0.0
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.8
+0.0
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+1.4
-0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+1.4
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+1.3
-0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.1
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.2
+0.4
N.D.
-0.1
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