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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12055 and 12056 are separated by 160 nucleotides
12056 and 12057 are separated by 253 nucleotides
12057 and 12058 are separated by 498 nucleotides
12058 and 12059 are separated by 5635 nucleotides
mRNA_3687: 12055 - K14837 NOP12 nucleolar protein 12, at 349,923 to 352,122
12055
mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352,283 to 353,789
12056
mRNA_3689: 12057 - Hypothetical Protein, at 354,043 to 355,679
12057
mRNA_3690: 12058 - BLAST Ser/Thr protein kinase [Mucor ambiguus], at 356,178 to 360,570
12058
mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520
12059
Group
Condition
mRNA
_3687
mRNA
_3688
mRNA
_3689
mRNA
_3690
mRNA
_3691
12055
12056
12057
12058
12059
ypd buoyancy
40 hrs No Buoyancy Separation
-2.5
+0.0
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-1.5
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.0
N.D.
+0.1
N.D.
growth on ypd
YPD
-0.7
+0.2
N.D.
-0.2
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
N.D.
-0.3
N.D.
auxotrophy
YNB Glucose
+0.1
-0.0
N.D.
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
+0.1
N.D.
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.7
-0.5
N.D.
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
-0.6
N.D.
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.2
N.D.
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.0
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
N.D.
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.8
+0.0
N.D.
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.9
-0.0
N.D.
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
-0.4
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
-0.1
N.D.
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.4
-0.4
N.D.
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
-0.2
N.D.
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
+0.4
N.D.
-0.1
N.D.
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