Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12056 and 12057 are separated by 253 nucleotides12057 and 12058 are separated by 498 nucleotides12058 and 12059 are separated by 5635 nucleotides12059 and 12060 are separated by 259 nucleotides mRNA_3688: 12056 - KOG4285 Mitotic phosphoprotein, at 352,283 to 353,789 12056 mRNA_3689: 12057 - Hypothetical Protein, at 354,043 to 355,679 12057 mRNA_3690: 12058 - BLAST Ser/Thr protein kinase [Mucor ambiguus], at 356,178 to 360,570 12058 mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520 12059 mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675 12060
Group Condition mRNA_3688 mRNA_3689 mRNA_3690 mRNA_3691 mRNA_3692
12056 12057 12058 12059 12060
facs on lipid accumulation Sorted Low BODIPY Gate -1.5 N.D. -0.1 N.D. -0.9
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 N.D. +0.0 N.D. -0.5
growth on ricinoleic acid YNB Glucose -0.6 N.D. -0.1 N.D. +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 N.D. -0.2 N.D. +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 N.D. +0.1 N.D. +0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.0 N.D. +0.1 N.D. -0.2
growth on oleic acid YNB Oleic Acid +0.0 N.D. -0.2 N.D. +0.1
auxotrophy YNB Glucose 75mM Methionine -0.0 N.D. -0.1 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy -0.3 N.D. +0.1 N.D. +0.2
growth on oleic acid YNB Glucose +0.0 N.D. +0.1 N.D. -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 N.D. +0.1 N.D. +0.3
auxotrophy Dropout Complete +0.0 N.D. -0.3 N.D. +0.4
auxotrophy YNB Glucose 75mM Arginine -0.0 N.D. -0.0 N.D. +0.2
growth on ypd YPD +0.2 N.D. -0.2 N.D. +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. +0.1 N.D. +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.4 N.D. -0.1 N.D. +0.0
auxotrophy YNB Glucose -0.0 N.D. -0.2 N.D. +0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.1 N.D. +0.5 N.D. -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.0 N.D. +0.2 N.D. +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 N.D. -0.1 N.D. +0.7
ypd buoyancy 40 hrs Low Buoyancy +0.2 N.D. +0.1 N.D. +0.7
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