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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12058 and 12059 are separated by 5635 nucleotides
12059 and 12060 are separated by 259 nucleotides
12060 and 12061 are separated by 443 nucleotides
12061 and 12062 are separated by 1965 nucleotides
mRNA_3690: 12058 - BLAST Ser/Thr protein kinase [Mucor ambiguus], at 356,178 to 360,570
12058
mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520
12059
mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675
12060
mRNA_3693: 12061 - K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase, at 373,119 to 374,635
12061
mRNA_3694: 12062 - K18334 fucD L-fuconate dehydratase, at 376,601 to 378,918
12062
Group
Condition
mRNA
_3690
mRNA
_3691
mRNA
_3692
mRNA
_3693
mRNA
_3694
12058
12059
12060
12061
12062
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.9
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.1
-0.7
-0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.0
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
-0.5
-0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.4
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose
-0.2
N.D.
+0.5
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.2
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.2
-0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.0
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.3
+0.1
-0.6
auxotrophy
Dropout Complete
-0.3
N.D.
+0.4
-0.0
-0.2
growth on ypd
YPD
-0.2
N.D.
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.7
-0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.3
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.3
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.7
+0.2
-0.0
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