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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12059 and 12060 are separated by 259 nucleotides
12060 and 12061 are separated by 443 nucleotides
12061 and 12062 are separated by 1965 nucleotides
12062 and 12063 are separated by 154 nucleotides
mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520
12059
mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675
12060
mRNA_3693: 12061 - K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase, at 373,119 to 374,635
12061
mRNA_3694: 12062 - K18334 fucD L-fuconate dehydratase, at 376,601 to 378,918
12062
mRNA_3695: 12063 - KOG1730 Thioredoxin-like protein, at 379,073 to 379,916
12063
Group
Condition
mRNA
_3691
mRNA
_3692
mRNA
_3693
mRNA
_3694
mRNA
_3695
12059
12060
12061
12062
12063
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.9
-0.2
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.2
+0.0
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.2
-0.1
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.7
-0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.5
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.4
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.2
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.0
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.0
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.2
-0.4
+0.1
auxotrophy
YNB Glucose
N.D.
+0.5
-0.3
-0.5
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.7
-0.2
-0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.2
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.1
-0.6
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.2
-0.0
-0.7
growth on ypd
YPD
N.D.
+0.1
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.4
-0.0
-0.2
+0.2
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