Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12059 and 12060 are separated by 259 nucleotides12060 and 12061 are separated by 443 nucleotides12061 and 12062 are separated by 1965 nucleotides12062 and 12063 are separated by 154 nucleotides mRNA_3691: 12059 - K11839 USP8, UBP5 ubiquitin carboxyl-terminal hydrolase 8, at 366,206 to 370,520 12059 mRNA_3692: 12060 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 370,780 to 372,675 12060 mRNA_3693: 12061 - K01714 dapA 4-hydroxy-tetrahydrodipicolinate synthase, at 373,119 to 374,635 12061 mRNA_3694: 12062 - K18334 fucD L-fuconate dehydratase, at 376,601 to 378,918 12062 mRNA_3695: 12063 - KOG1730 Thioredoxin-like protein, at 379,073 to 379,916 12063
Group Condition mRNA_3691 mRNA_3692 mRNA_3693 mRNA_3694 mRNA_3695
12059 12060 12061 12062 12063
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.9 -0.2 -0.1 -0.3
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.3 -0.2 +0.0 -1.0
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.2 -0.2 -0.1 -0.4
growth on oleic acid YNB Oleic Acid N.D. +0.1 -0.7 -0.2 -0.1
growth on oleic acid YNB Glucose N.D. -0.2 -0.5 +0.1 -0.1
growth on ricinoleic acid YNB Glucose N.D. +0.0 -0.4 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. +0.4 -0.2 -0.5 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.0 -0.0 -0.2 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.5 -0.0 -0.0 -0.0
ypd buoyancy 40 hrs High Buoyancy N.D. +0.2 -0.2 -0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.1 -0.2 -0.4 +0.1
auxotrophy YNB Glucose N.D. +0.5 -0.3 -0.5 -0.0
ypd buoyancy 40 hrs Low Buoyancy N.D. +0.7 -0.2 -0.4 -0.3
auxotrophy YNB Glucose 75mM Arginine N.D. +0.2 -0.2 -0.4 +0.1
auxotrophy YNB Glucose 75mM Methionine N.D. +0.1 -0.1 -0.3 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.3 +0.1 -0.6 +0.3
ypd buoyancy 40 hrs Median Buoyancy N.D. +0.3 +0.0 -0.1 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.7 +0.2 -0.0 -0.7
growth on ypd YPD N.D. +0.1 +0.2 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. +0.2 +0.1 -0.1 +0.1
auxotrophy Dropout Complete N.D. +0.4 -0.0 -0.2 +0.2
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