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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12062 and 12063 are separated by 154 nucleotides
12063 and 12064 are separated by 358 nucleotides
12064 and 12065 are separated by 274 nucleotides
12065 and 12066 are separated by 256 nucleotides
mRNA_3694: 12062 - K18334 fucD L-fuconate dehydratase, at 376,601 to 378,918
12062
mRNA_3695: 12063 - KOG1730 Thioredoxin-like protein, at 379,073 to 379,916
12063
mRNA_3696: 12064 - SUPERFAMILY--SSF53335, at 380,275 to 383,085
12064
mRNA_3697: 12065 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 383,360 to 385,326
12065
mRNA_3698: 12066 - K10428 DCTN6 dynactin 6, at 385,583 to 386,475
12066
Group
Condition
mRNA
_3694
mRNA
_3695
mRNA
_3696
mRNA
_3697
mRNA
_3698
12062
12063
12064
12065
12066
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-1.0
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.7
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.3
-0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.5
-0.0
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.3
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
+0.4
N.D.
N.D.
growth on ypd
YPD
-0.2
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.1
+0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.2
+0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.3
+0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.0
+0.8
N.D.
N.D.
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