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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12065 and 12066 are separated by 256 nucleotides
12066 and 12067 are separated by 151 nucleotides
12067 and 12068 are separated by 278 nucleotides
12068 and 12069 are separated by 348 nucleotides
mRNA_3697: 12065 - K04371 MAPK1_3 mitogen-activated protein kinase 1/3, at 383,360 to 385,326
12065
mRNA_3698: 12066 - K10428 DCTN6 dynactin 6, at 385,583 to 386,475
12066
mRNA_3699: 12067 - KOG0870 DNA polymerase epsilon, subunit D, at 386,627 to 387,665
12067
mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387,944 to 388,740
12068
mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389,089 to 390,202
12069
Group
Condition
mRNA
_3697
mRNA
_3698
mRNA
_3699
mRNA
_3700
mRNA
_3701
12065
12066
12067
12068
12069
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.6
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-1.6
+0.3
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
-0.7
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.9
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.6
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.5
-0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.5
-0.4
+0.7
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
+0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
+0.1
-0.0
growth on ypd
YPD
N.D.
N.D.
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.7
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
+0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
-0.3
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.5
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.8
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+1.1
+0.2
+0.3
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