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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12067 and 12068 are separated by 278 nucleotides
12068 and 12069 are separated by 348 nucleotides
12069 and 12070 are separated by 351 nucleotides
12070 and 12071 are separated by 230 nucleotides
mRNA_3699: 12067 - KOG0870 DNA polymerase epsilon, subunit D, at 386,627 to 387,665
12067
mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387,944 to 388,740
12068
mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389,089 to 390,202
12069
mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390,554 to 394,764
12070
mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394,995 to 398,800
12071
Group
Condition
mRNA
_3699
mRNA
_3700
mRNA
_3701
mRNA
_3702
mRNA
_3703
12067
12068
12069
12070
12071
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
-0.2
N.D.
-0.7
auxotrophy
Dropout Complete
-0.7
-0.3
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
+0.3
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.9
+0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.6
+0.3
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.5
-0.4
+0.7
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.1
+0.3
N.D.
-0.2
auxotrophy
YNB Glucose
-0.1
-0.1
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.5
+0.0
N.D.
+0.0
growth on ypd
YPD
-0.1
-0.1
+0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.2
+0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
+0.6
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
+0.4
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.5
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.5
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.2
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.8
+0.1
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
+0.2
+0.3
N.D.
+0.3
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