Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12067 and 12068 are separated by 278 nucleotides12068 and 12069 are separated by 348 nucleotides12069 and 12070 are separated by 351 nucleotides12070 and 12071 are separated by 230 nucleotides mRNA_3699: 12067 - KOG0870 DNA polymerase epsilon, subunit D, at 386,627 to 387,665 12067 mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387,944 to 388,740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389,089 to 390,202 12069 mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390,554 to 394,764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394,995 to 398,800 12071
Group Condition mRNA_3699 mRNA_3700 mRNA_3701 mRNA_3702 mRNA_3703
12067 12068 12069 12070 12071
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 -0.1 -0.2 N.D. -0.7
auxotrophy Dropout Complete -0.7 -0.3 +0.2 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -1.6 +0.3 +0.3 N.D. +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.9 +0.5 N.D. -0.1
growth on ricinoleic acid YNB Glucose -0.3 -0.6 +0.3 N.D. -0.0
growth on oleic acid YNB Glucose -0.5 -0.4 +0.7 N.D. -0.2
auxotrophy YNB Glucose 75mM Methionine -0.5 -0.1 +0.3 N.D. -0.2
auxotrophy YNB Glucose -0.1 -0.1 +0.2 N.D. -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.5 -0.2 -0.1 N.D. -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 +0.1 -0.0 N.D. -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.4 +0.5 +0.0 N.D. +0.0
growth on ypd YPD -0.1 -0.1 +0.3 N.D. -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -0.1 -0.1 N.D. -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.7 -0.2 +0.0 N.D. -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 -0.3 +0.6 N.D. -0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.3 +0.4 N.D. -0.1
growth on oleic acid YNB Oleic Acid +0.1 +0.1 +0.5 N.D. -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.2 +0.5 N.D. -0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 +0.2 +0.2 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy +0.8 +0.1 +0.2 N.D. +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +1.1 +0.2 +0.3 N.D. +0.3
remove
mRNA_3699
plot
remove
mRNA_3700
plot
remove
mRNA_3701
remove
mRNA_3702
plot
remove
mRNA_3703
plot