Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12068 and 12069 are separated by 348 nucleotides12069 and 12070 are separated by 351 nucleotides12070 and 12071 are separated by 230 nucleotides12071 and 12072 are separated by 257 nucleotides mRNA_3700: 12068 - K03020 RPC19, POLR1D DNA-directed RNA polymerases I and III subunit RPAC2, at 387,944 to 388,740 12068 mRNA_3701: 12069 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 389,089 to 390,202 12069 mRNA_3702: 12070 - HMMPfam-Inner centromere protein, ARK binding region-PF03941, at 390,554 to 394,764 12070 mRNA_3703: 12071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 394,995 to 398,800 12071 mRNA_3704: 12072 - Hypothetical Protein, at 399,058 to 399,573 12072
Group Condition mRNA_3700 mRNA_3701 mRNA_3702 mRNA_3703 mRNA_3704
12068 12069 12070 12071 12072
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.2 N.D. -0.7 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.2 -0.1 N.D. -0.1 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.9 +0.5 N.D. -0.1 N.D.
auxotrophy Dropout Complete -0.3 +0.2 N.D. -0.2 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.0 N.D. -0.1 N.D.
growth on ricinoleic acid YNB Glucose -0.6 +0.3 N.D. -0.0 N.D.
auxotrophy YNB Glucose -0.1 +0.2 N.D. -0.2 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.1 N.D. -0.0 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.0 N.D. -0.1 N.D.
growth on oleic acid YNB Glucose -0.4 +0.7 N.D. -0.2 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.3 N.D. -0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 +0.6 N.D. -0.1 N.D.
growth on ypd YPD -0.1 +0.3 N.D. -0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.2 N.D. +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 +0.2 N.D. +0.1 N.D.
growth on oleic acid YNB Oleic Acid +0.1 +0.5 N.D. -0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.5 +0.0 N.D. +0.0 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.5 N.D. -0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.3 +0.4 N.D. -0.1 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 +0.3 N.D. +0.1 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +0.3 N.D. +0.3 N.D.
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