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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12073 and 12074 overlap by 11 nucleotides
12074 and 12075 are separated by 626 nucleotides
12075 and 12076 are separated by 327 nucleotides
12076 and 12077 are separated by 303 nucleotides
mRNA_3705: 12073 - Hypothetical Protein, at 399,729 to 400,196
12073
mRNA_3706: 12074 - KOG1550 Extracellular protein SEL-1 and related proteins, at 400,186 to 402,852
12074
mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403,479 to 405,078
12075
mRNA_3708: 12076 - Hypothetical Protein, at 405,406 to 406,282
12076
mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406,586 to 407,790
12077
Group
Condition
mRNA
_3705
mRNA
_3706
mRNA
_3707
mRNA
_3708
mRNA
_3709
12073
12074
12075
12076
12077
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.9
N.D.
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.7
N.D.
-0.0
-0.3
growth on oleic acid
YNB Glucose
-0.2
-0.5
N.D.
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.6
N.D.
-0.1
-0.1
growth on ypd
YPD
-0.3
-0.2
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.5
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
N.D.
+0.2
-0.4
growth on oleic acid
YNB Oleic Acid
-0.3
+0.4
N.D.
-0.1
-0.2
auxotrophy
YNB Glucose
+0.1
-0.6
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
N.D.
-0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
N.D.
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
N.D.
+0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
N.D.
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
+0.1
-0.2
auxotrophy
Dropout Complete
+0.1
-0.0
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
N.D.
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.0
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
N.D.
+0.3
+0.3
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