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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12075 and 12076 are separated by 327 nucleotides
12076 and 12077 are separated by 303 nucleotides
12077 and 12078 are separated by 247 nucleotides
12078 and 12079 are separated by 38 nucleotides
mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403,479 to 405,078
12075
mRNA_3708: 12076 - Hypothetical Protein, at 405,406 to 406,282
12076
mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406,586 to 407,790
12077
mRNA_3710: 12078 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408,038 to 408,694
12078
mRNA_3711: 12079 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 408,733 to 409,937
12079
Group
Condition
mRNA
_3707
mRNA
_3708
mRNA
_3709
mRNA
_3710
mRNA
_3711
12075
12076
12077
12078
12079
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.4
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.3
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.4
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.2
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.3
N.D.
-0.1
growth on ypd
YPD
N.D.
-0.2
-0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.0
-0.4
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.2
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.1
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.2
N.D.
+0.3
auxotrophy
Dropout Complete
N.D.
-0.2
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.0
N.D.
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.6
N.D.
+0.3
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