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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12092 and 12093 are separated by 416 nucleotides
12093 and 12094 are separated by 80 nucleotides
12094 and 12095 are separated by 484 nucleotides
12095 and 12096 are separated by 73 nucleotides
mRNA_3724: 12092 - KOG1744 Histone H2B, at 437,180 to 437,338
12092
mRNA_3725: 12093 - K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2, at 437,755 to 438,417
12093
mRNA_3726: 12094 - K04082 hscB, HSCB, HSC20 molecular chaperone HscB, at 438,498 to 439,465
12094
mRNA_3727: 12095 - SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047, at 439,950 to 441,597
12095
mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441,671 to 443,858
12096
Group
Condition
mRNA
_3724
mRNA
_3725
mRNA
_3726
mRNA
_3727
mRNA
_3728
12092
12093
12094
12095
12096
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-1.1
-0.3
growth on ypd
YPD
N.D.
N.D.
N.D.
-1.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.7
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
-0.6
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
+0.1
+0.0
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
+0.3
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
+0.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
+0.4
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
+0.6
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
+0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
+0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
+0.6
+0.4
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