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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12093 and 12094 are separated by 80 nucleotides
12094 and 12095 are separated by 484 nucleotides
12095 and 12096 are separated by 73 nucleotides
12096 and 12097 are separated by 352 nucleotides
mRNA_3725: 12093 - K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2, at 437,755 to 438,417
12093
mRNA_3726: 12094 - K04082 hscB, HSCB, HSC20 molecular chaperone HscB, at 438,498 to 439,465
12094
mRNA_3727: 12095 - SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047, at 439,950 to 441,597
12095
mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441,671 to 443,858
12096
mRNA_3729: 12097 - K15280 SLC35C2 solute carrier family 35, member C2, at 444,211 to 445,530
12097
Group
Condition
mRNA
_3725
mRNA
_3726
mRNA
_3727
mRNA
_3728
mRNA
_3729
12093
12094
12095
12096
12097
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.6
+0.3
-2.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.7
-0.4
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.1
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.1
-1.0
growth on ypd
YPD
N.D.
N.D.
-1.2
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.0
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.0
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.6
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
+0.0
+1.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
+0.0
+0.7
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.0
+1.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.8
-0.2
+0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
-0.1
+1.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.5
-0.3
+1.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.4
+0.3
+1.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
-0.1
+1.7
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.5
+2.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.4
+0.3
+3.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.6
+0.4
+3.8
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