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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12095 and 12096 are separated by 73 nucleotides
12096 and 12097 are separated by 352 nucleotides
12097 and 12098 are separated by 1278 nucleotides
12098 and 12099 are separated by 2167 nucleotides
mRNA_3727: 12095 - SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047, at 439,950 to 441,597
12095
mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441,671 to 443,858
12096
mRNA_3729: 12097 - K15280 SLC35C2 solute carrier family 35, member C2, at 444,211 to 445,530
12097
mRNA_3730: 12098 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 446,809 to 447,756
12098
mRNA_3731: 12099 - K00820 glmS, GFPT glucosamine--fructose-6-phosphate aminotransferase (isomerizing), at 449,924 to 452,631
12099
Group
Condition
mRNA
_3727
mRNA
_3728
mRNA
_3729
mRNA
_3730
mRNA
_3731
12095
12096
12097
12098
12099
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.3
-2.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.7
-0.4
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
-0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-1.0
N.D.
N.D.
growth on ypd
YPD
-1.2
-0.0
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.0
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
+1.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.7
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.0
+1.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.8
-0.2
+0.7
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.1
+1.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.5
-0.3
+1.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.3
+1.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
+1.7
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.5
+2.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.3
+3.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.4
+3.8
N.D.
N.D.
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