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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12100 and 12101 are separated by 405 nucleotides
12101 and 12102 are separated by 482 nucleotides
12102 and 12103 are separated by 152 nucleotides
12103 and 12104 are separated by 247 nucleotides
mRNA_3732: 12100 - K02541 MCM3 DNA replication licensing factor MCM3, at 453,754 to 456,999
12100
mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457,405 to 460,471
12101
mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748
12102
mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461,901 to 463,089
12103
mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527
12104
Group
Condition
mRNA
_3732
mRNA
_3733
mRNA
_3734
mRNA
_3735
mRNA
_3736
12100
12101
12102
12103
12104
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.2
-1.0
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.0
-0.7
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.0
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.6
+0.3
-1.9
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.1
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.3
-0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.0
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.3
+0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.2
-0.3
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.5
-0.0
-0.5
auxotrophy
YNB Glucose
N.D.
-0.4
+0.2
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.4
+0.3
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.0
-0.2
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.4
+0.4
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.3
+0.6
+0.5
growth on ypd
YPD
N.D.
-0.1
-0.1
-0.7
+1.7
auxotrophy
Dropout Complete
N.D.
-0.2
+0.4
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.7
-0.3
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.0
+0.5
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.3
+0.4
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.5
+0.3
+1.0
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