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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12101 and 12102 are separated by 482 nucleotides
12102 and 12103 are separated by 152 nucleotides
12103 and 12104 are separated by 247 nucleotides
12104 and 12105 are separated by 269 nucleotides
mRNA_3733: 12101 - BLAST Hybrid signal transduction histidine kinase B [Leucoa..., at 457,405 to 460,471
12101
mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748
12102
mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461,901 to 463,089
12103
mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527
12104
mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425
12105
Group
Condition
mRNA
_3733
mRNA
_3734
mRNA
_3735
mRNA
_3736
mRNA
_3737
12101
12102
12103
12104
12105
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.0
-0.7
-0.4
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
-1.0
-0.8
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
+0.3
-1.9
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
-0.3
-0.0
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.2
-0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.0
-0.5
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.2
+0.1
-0.5
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
-0.0
-0.5
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
-0.3
+0.8
-0.4
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.2
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.3
+0.3
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.4
+0.4
-0.3
-0.6
growth on oleic acid
YNB Oleic Acid
-0.0
-0.4
+0.3
+0.4
-0.0
auxotrophy
Dropout Complete
-0.2
+0.4
+0.7
-0.1
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
-0.3
+0.6
+0.5
-0.4
auxotrophy
YNB Glucose
-0.4
+0.2
+0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
+0.5
+1.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.7
-0.3
+0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+0.4
+0.6
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
+0.3
+1.0
+0.6
growth on ypd
YPD
-0.1
-0.1
-0.7
+1.7
+2.9
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