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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12102 and 12103 are separated by 152 nucleotides
12103 and 12104 are separated by 247 nucleotides
12104 and 12105 are separated by 269 nucleotides
12105 and 12106 are separated by 258 nucleotides
mRNA_3734: 12102 - Interpro Protein HRI1, at 460,954 to 461,748
12102
mRNA_3735: 12103 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 461,901 to 463,089
12103
mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527
12104
mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425
12105
mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899
12106
Group
Condition
mRNA
_3734
mRNA
_3735
mRNA
_3736
mRNA
_3737
mRNA
_3738
12102
12103
12104
12105
12106
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.1
-0.5
-1.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.3
-1.9
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-1.0
-0.8
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.7
-0.4
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.5
-0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.0
-0.5
-1.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.3
-0.0
-0.9
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.4
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.2
-0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.4
-0.3
-0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
+0.8
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
-0.4
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.3
+0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.6
+0.5
-0.4
N.D.
auxotrophy
Dropout Complete
+0.4
+0.7
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose
+0.2
+0.3
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.3
+0.6
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.5
+1.0
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.4
+0.6
+0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.3
+1.0
+0.6
N.D.
growth on ypd
YPD
-0.1
-0.7
+1.7
+2.9
N.D.
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