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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12104 and 12105 are separated by 269 nucleotides
12105 and 12106 are separated by 258 nucleotides
12106 and 12107 are separated by 533 nucleotides
12107 and 12108 are separated by 313 nucleotides
mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463,337 to 464,527
12104
mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425
12105
mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899
12106
mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585
12107
mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347
12108
Group
Condition
mRNA
_3736
mRNA
_3737
mRNA
_3738
mRNA
_3739
mRNA
_3740
12104
12105
12106
12107
12108
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.9
-0.8
N.D.
-0.8
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-1.4
N.D.
-1.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-1.1
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.6
N.D.
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.6
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.1
N.D.
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.9
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.5
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
N.D.
+0.1
+0.0
growth on oleic acid
YNB Glucose
-0.5
+0.1
N.D.
-0.2
+0.1
auxotrophy
Dropout Complete
-0.1
-0.5
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.1
N.D.
-0.6
+0.2
auxotrophy
YNB Glucose
+0.1
+0.2
N.D.
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
-0.4
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.6
N.D.
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.0
N.D.
+0.4
+0.4
growth on ricinoleic acid
YNB Glucose
+0.5
-0.4
N.D.
+1.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
-0.4
N.D.
+0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+1.0
+0.6
N.D.
-0.0
+0.1
growth on ypd
YPD
+1.7
+2.9
N.D.
+0.3
+0.1
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