Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12105 and 12106 are separated by 258 nucleotides12106 and 12107 are separated by 533 nucleotides12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425 12105 mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899 12106 mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109
Group Condition mRNA_3737 mRNA_3738 mRNA_3739 mRNA_3740 mRNA_3741
12105 12106 12107 12108 12109
ypd buoyancy 40 hrs No Buoyancy Separation -1.4 N.D. -1.4 -0.1 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -0.9 N.D. -0.1 -0.3 -1.6
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8 N.D. -0.8 -0.2 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.6 N.D. -0.1 -0.3 -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.4 N.D. +0.1 +0.0 -1.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 N.D. -0.5 -0.2 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.5 N.D. -0.1 +0.0 -0.6
auxotrophy Dropout Complete -0.5 N.D. +0.0 +0.3 -0.9
auxotrophy YNB Glucose 75mM Arginine -0.1 N.D. -0.3 +0.1 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -1.1 N.D. -0.1 -0.1 +0.4
growth on oleic acid YNB Glucose +0.1 N.D. -0.2 +0.1 -0.7
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. -0.6 +0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 N.D. +0.1 +0.2 -0.4
auxotrophy YNB Glucose +0.2 N.D. -0.0 +0.0 -0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 N.D. -0.2 -0.3 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 N.D. +0.4 +0.4 -0.6
ypd buoyancy 40 hrs Median Buoyancy +0.6 N.D. -0.4 +0.0 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.6 N.D. -0.0 +0.1 -0.3
growth on oleic acid YNB Oleic Acid -0.0 N.D. +0.4 +0.4 -0.3
growth on ricinoleic acid YNB Glucose -0.4 N.D. +1.0 +0.2 -0.2
growth on ypd YPD +2.9 N.D. +0.3 +0.1 +0.2
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