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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12105 and 12106 are separated by 258 nucleotides
12106 and 12107 are separated by 533 nucleotides
12107 and 12108 are separated by 313 nucleotides
12108 and 12109 overlap by 8 nucleotides
mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464,797 to 466,425
12105
mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466,684 to 467,899
12106
mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585
12107
mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347
12108
mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925
12109
Group
Condition
mRNA
_3737
mRNA
_3738
mRNA
_3739
mRNA
_3740
mRNA
_3741
12105
12106
12107
12108
12109
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
N.D.
-1.4
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
-0.1
-0.3
-1.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
N.D.
-0.8
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
-0.1
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
+0.1
+0.0
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
-0.5
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
-0.1
+0.0
-0.6
auxotrophy
Dropout Complete
-0.5
N.D.
+0.0
+0.3
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.3
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.1
N.D.
-0.1
-0.1
+0.4
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
+0.1
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.6
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+0.1
+0.2
-0.4
auxotrophy
YNB Glucose
+0.2
N.D.
-0.0
+0.0
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
-0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.4
+0.4
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
-0.4
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.6
N.D.
-0.0
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
+0.4
+0.4
-0.3
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+1.0
+0.2
-0.2
growth on ypd
YPD
+2.9
N.D.
+0.3
+0.1
+0.2
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